• strict warning: Non-static method view::load() should not be called statically in /home/peco/webapps/dp6_peter/sites/default/modules/views/views.module on line 906.
  • strict warning: Declaration of views_handler_argument::init() should be compatible with views_handler::init(&$view, $options) in /home/peco/webapps/dp6_peter/sites/default/modules/views/handlers/views_handler_argument.inc on line 744.
  • strict warning: Declaration of views_handler_filter::options_validate() should be compatible with views_handler::options_validate($form, &$form_state) in /home/peco/webapps/dp6_peter/sites/default/modules/views/handlers/views_handler_filter.inc on line 607.
  • strict warning: Declaration of views_handler_filter::options_submit() should be compatible with views_handler::options_submit($form, &$form_state) in /home/peco/webapps/dp6_peter/sites/default/modules/views/handlers/views_handler_filter.inc on line 607.
  • strict warning: Declaration of views_plugin_style_default::options() should be compatible with views_object::options() in /home/peco/webapps/dp6_peter/sites/default/modules/views/plugins/views_plugin_style_default.inc on line 24.
  • strict warning: Declaration of views_plugin_row::options_validate() should be compatible with views_plugin::options_validate(&$form, &$form_state) in /home/peco/webapps/dp6_peter/sites/default/modules/views/plugins/views_plugin_row.inc on line 134.
  • strict warning: Declaration of views_plugin_row::options_submit() should be compatible with views_plugin::options_submit(&$form, &$form_state) in /home/peco/webapps/dp6_peter/sites/default/modules/views/plugins/views_plugin_row.inc on line 134.

Python Bioinformatics Tools

I've decided to collect together various Python programs I've written to solve relatively simple bioinformatics tasks. I'm aware that Biopython exists and have used it occasionally, but it's quite large and I've often found it takes more time to learn how to use it than it does to write my own version. I've collected some of these tools here in case they are of use to other people looking for a quick solution.